Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs34717063 | chr4:110755790 | C/T | 0.000125 | 480 | 16.47 | 16.02 | 14.55 | KM Plot |
| THCA | rs34720106 | chr7:64291745 | G/A | 2.82E-11 | 489 | 16.37 | 13 | 16.87 | KM Plot |
| THCA | rs34734592 | chr4:110755833 | G/A | 0.000143 | 473 | 16.47 | 16.07 | 14.55 | KM Plot |
| THCA | rs34737506 | chr4:56689876 | TGTTC/T | 0.000224 | 473 | 16.47 | 14.7 | 17.67 | KM Plot |
| THCA | rs34745286 | chr16:20893419 | G/A | 3.72E-10 | 490 | 15.93 | 15 | 14.3 | KM Plot |
| THCA | rs34748378 | chr14:24751085 | CT/C | 0.000149 | 471 | 15.9 | 15.73 | 17.13 | KM Plot |
| THCA | rs34770363 | chr6:153336230 | G/T | 5.74E-5 | 482 | 15.17 | 17.93 | 10.45 | KM Plot |
| THCA | rs34792031 | chr16:20873071 | C/CA | 0.000123 | 482 | 16.33 | 14.75 | 17.65 | KM Plot |
| THCA | rs34797859 | chr2:216204210 | C/A | 3.76E-9 | 484 | 16.65 | 15.17 | 12.6 | KM Plot |
| THCA | rs34840005 | chr6:133090649 | G/GA | 5.31E-7 | 485 | 15.65 | 17.13 | 17.85 | KM Plot |
| THCA | rs34844087 | chr16:20684312 | A/T | 1.07E-6 | 488 | 15.9 | 15.17 | 42.77 | KM Plot |
| THCA | rs34854770 | chr12:58086872 | C/T | 0.000204 | 478 | 14.75 | 19 | 16.8 | KM Plot |
| THCA | rs34869903 | chr16:20910193 | GA/G | 0.000103 | 487 | 16.33 | 14.7 | 17.65 | KM Plot |
| THCA | rs34870056 | chr10:81948055 | G/A | 0.000118 | 488 | 15.93 | 16.65 | 9.77 | KM Plot |
| THCA | rs34876045 | chr1:184014592 | T/C | 4.32E-8 | 483 | 15 | 17.3 | 21.65 | KM Plot |